segName='   A'
seq="""
GLY SER HIS MET PHE LEU PRO LEU TYR PHE 
GLY TRP PHE LEU THR LYS LYS SER SER GLU 
THR LEU ARG LYS ALA GLY GLN VAL PHE LEU 
GLU GLU LEU GLY ASN HIS LYS ALA PHE LYS 
LYS GLU LEU ARG HIS PHE ILE SER GLY ASP 
GLU PRO LYS GLU LYS LEU ASP LEU VAL SER 
TYR PHE GLY LYS ARG PRO PRO GLY VAL LEU 
HIS CYS THR THR LYS PHE CYS ASP TYR GLY 
LYS ALA THR GLY ALA GLU GLU TYR ALA GLN 
GLN ASP VAL VAL ARG ARG SER TYR GLY LYS 
ALA PHE LYS LEU SER ILE SER ALA LEU PHE 
VAL THR PRO LYS THR ALA GLY ALA GLN VAL 
VAL LEU ASN GLU GLN GLU LEU GLN LEU TRP 
PRO SER ASP LEU ASP LYS PRO SER SER SER 
GLU SER LEU PRO PRO GLY SER ARG ALA HIS 
VAL THR LEU GLY CYS ALA ALA ASP VAL GLN 
PRO VAL GLN THR GLY LEU ASP LEU LEU GLU 
ILE LEU GLN GLN VAL LYS GLY GLY SER GLN 
GLY GLU GLU VAL GLY GLU LEU PRO ARG GLY 
LYS LEU TYR SER LEU GLY LYS GLY ARG TRP 
MET LEU SER LEU ALA LYS LYS MET GLU VAL 
LYS ALA ILE PHE THR GLY TYR TYR GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
