segName='   A'
seq="""
MET ARG GLY SER HIS HIS HIS HIS HIS HIS 
THR ASP PRO MET SER ALA ILE GLN ASN LEU 
HIS SER PHE ASP PRO PHE ALA ASP ALA SER 
LYS GLY ASP ASP LEU LEU PRO ALA GLY THR 
GLU ASP TYR ILE HIS ILE ARG ILE GLN GLN 
ARG ASN GLY ARG LYS THR LEU THR THR VAL 
GLN GLY ILE ALA ASP ASP TYR ASP LYS LYS 
LYS LEU VAL LYS ALA PHE LYS LYS LYS PHE 
ALA CYS ASN GLY THR VAL ILE GLU HIS PRO 
GLU TYR GLY GLU VAL ILE GLN LEU GLN GLY 
ASP GLN ARG LYS ASN ILE CYS GLN PHE LEU 
VAL GLU ILE GLY LEU ALA LYS ASP ASP GLN 
LEU LYS VAL HIS GLY PHE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
