segName='   A'
seq="""
GLY SER HIS MET PRO VAL CYS ARG HIS ILE 
ARG LYS GLY LEU GLU GLN GLY ASN LEU LYS 
LYS ALA LEU VAL ASN VAL GLU TRP ASN ILE 
CYS GLN ASP CYS LYS THR ASP ASN LYS VAL 
LYS ASP LYS ALA GLU GLU GLU THR GLU GLU 
LYS PRO SER VAL TRP LEU CYS LEU LYS CYS 
GLY HIS GLN GLY CYS GLY ARG ASN SER GLN 
GLU GLN HIS ALA LEU LYS HIS TYR LEU THR 
PRO ARG SER GLU PRO HIS CYS LEU VAL LEU 
SER LEU ASP ASN TRP SER VAL TRP CYS TYR 
VAL CYS ASP ASN GLU VAL GLN TYR CYS SER 
SER ASN GLN LEU GLY GLN VAL VAL ASP TYR 
VAL ARG LYS GLN ALA SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
