segName='   A'
seq="""
MET GLU GLY LEU SER MET ASP GLN VAL VAL 
ILE PHE LYS GLN ILE PHE ASP LYS VAL ARG 
ASN ASP LEU ASN TYR GLN TRP PHE TYR SER 
GLU LEU LYS ARG HIS ASN VAL SER HIS TYR 
ILE TYR TYR LEU ALA THR GLU ASN VAL HIS 
ILE VAL LEU LYS ASN ASP ASN THR VAL LEU 
LEU LYS GLY LEU LYS ASN ILE VAL SER VAL 
LYS PHE SER LYS ASP ARG HIS LEU ILE GLU 
THR THR SER ASN LYS LEU LYS SER ARG GLU 
ILE THR PHE GLN GLU TYR ARG ARG ASN LEU 
ALA LYS ALA GLY VAL PHE ARG TRP VAL THR 
ASN ILE HIS GLU GLN LYS ARG TYR TYR TYR 
THR PHE ASP ASN SER LEU LEU PHE THR GLU 
SER ILE GLN LYS THR THR GLN ILE PHE PRO 
ARG LEU GLU HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
