segName='   B'
seq="""
MET TYR VAL CYS HIS PHE GLU ASN CYS GLY 
LYS ALA PHE LYS LYS HIS ASN GLN LEU LYS 
VAL HIS GLN PHE SER HIS THR GLN GLN LEU 
PRO TYR GLU CYS PRO HIS GLU GLY CYS ASP 
LYS ARG PHE SER LEU PRO SER ARG LEU LYS 
ARG HIS GLU LYS VAL HIS ALA GLY TYR PRO 
CYS LYS LYS ASP ASP SER CYS SER PHE VAL 
GLY LYS THR TRP THR LEU TYR LEU LYS HIS 
VAL ALA GLU CYS HIS GLN ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
