segName='   A'
seq="""
MET LEU SER GLN THR LEU LEU GLU MET THR 
GLU GLN MET ILE GLU VAL ALA GLU LYS GLY 
ALA ASP ARG TYR GLN GLU GLY LYS ASN SER 
ASN HIS SER TYR ASP PHE PHE GLU THR ILE 
LYS PRO ALA VAL GLU GLU ASN ASP GLU LEU 
ALA ALA ARG TRP ALA GLU GLY ALA LEU GLU 
LEU ILE LYS VAL ARG ARG PRO LYS TYR VAL 
HIS LYS GLU GLN ILE GLU ALA VAL LYS ASP 
ASN PHE LEU GLU LEU VAL LEU GLN SER TYR 
VAL HIS HIS ILE HIS LYS LYS ARG PHE LYS 
ASP ILE THR GLU SER VAL LEU TYR THR LEU 
HIS ALA VAL LYS ASP GLU ILE ALA ARG GLU 
ASP SER ARG LEU GLU HIS HIS HIS HIS HIS 
HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
