segName='   A'
seq="""
MET ILE SER ASN ALA LYS ILE ALA ARG ILE 
ASN GLU LEU ALA ALA LYS ALA LYS ALA GLY 
VAL ILE THR GLU GLU GLU LYS ALA GLU GLN 
GLN LYS LEU ARG GLN GLU TYR LEU LYS GLY 
PHE ARG SER SER MET LYS ASN THR LEU LYS 
SER VAL LYS ILE ILE ASP PRO GLU GLY ASN 
ASP VAL THR PRO GLU LYS LEU LYS ARG GLU 
GLN ARG ASN ASN LYS LEU HIS LEU GLU HIS 
HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
