segName='   A'
seq="""
LEU ASN ILE GLU ARG LEU THR THR LEU GLN 
PRO VAL TRP ASP ARG TYR ASP THR GLN ILE 
HIS ASN GLN LYS ASP ASN ASP ASN GLU VAL 
PRO VAL HIS GLN VAL SER TYR THR ASN LEU 
ALA GLU MET VAL GLY GLU MET ASN LYS LEU 
LEU GLU PRO SER GLN VAL HIS LEU LYS PHE 
GLU LEU HIS ASP LYS LEU ASN GLU TYR TYR 
VAL LYS VAL ILE GLU ASP SER THR ASN GLU 
VAL ILE ARG GLU ILE PRO PRO LYS ARG TRP 
LEU ASP PHE TYR ALA ALA MET THR GLU PHE 
LEU GLY LEU PHE VAL ASP GLU LYS LYS LEU 
GLU HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
