segName='   A'
seq="""
ALA ALA GLU SER GLY VAL SER ARG PRO VAL 
PRO GLN LEU LYS ARG THR THR MET ARG ILE 
LEU ILE GLY LEU LEU VAL GLN ASN PRO GLU 
LEU ALA THR LEU VAL PRO PRO LEU GLU ASN 
LEU ASP GLU ASN LYS LEU PRO GLY LEU GLY 
LEU PHE ARG GLU LEU VAL ASN THR CYS LEU 
SER GLN PRO GLY LEU THR THR GLY GLN LEU 
LEU GLU HIS TYR ARG GLY THR ASN ASN ALA 
ALA THR LEU GLU LYS LEU SER MET TRP ASP 
ASP ILE ALA ASP LYS ASN ILE ALA GLU GLN 
THR PHE THR ASP SER LEU ASN HIS MET PHE 
ASP SER LEU LEU GLU LEU ARG GLN GLU GLU 
LEU ILE ALA ARG GLU ARG THR HIS GLY LEU 
SER ASN GLU GLU ARG LEU GLU LEU TRP THR 
LEU ASN GLN GLU LEU ALA LYS LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
