segName='   A'
seq="""
GLY SER MET PRO LYS PRO GLY ILE LEU LYS 
SER LYS SER MET PHE CYS VAL ILE TYR ARG 
SER SER LYS ARG ASP GLN THR TYR LEU TYR 
VAL GLU LYS LYS ASP ASP PHE SER ARG VAL 
PRO GLU GLU LEU MET LYS GLY PHE GLY GLN 
PRO GLN LEU ALA MET ILE LEU PRO LEU ASP 
GLY ARG LYS LYS LEU VAL ASN ALA ASP ILE 
GLU LYS VAL LYS GLN ALA LEU THR GLU GLN 
GLY TYR TYR LEU GLN LEU PRO PRO PRO PRO 
GLU ASP LEU LEU LYS GLN HIS LEU SER VAL 
MET GLY GLN LYS THR ASP ASP THR ASN LYS 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
