segName='   A'
seq="""
GLY HIS HIS HIS HIS HIS HIS LEU GLU SER 
SER ASN VAL PRO ALA ASP MET ILE ASN LEU 
ARG LEU ILE LEU VAL SER GLY LYS THR LYS 
GLU PHE LEU PHE SER PRO ASN ASP SER ALA 
SER ASP ILE ALA LYS HIS VAL TYR ASP ASN 
TRP PRO MET ASP TRP GLU GLU GLU GLN VAL 
SER SER PRO ASN ILE LEU ARG LEU ILE TYR 
GLN GLY ARG PHE LEU HIS GLY ASN VAL THR 
LEU GLY ALA LEU LYS LEU PRO PHE GLY LYS 
THR THR VAL MET HIS LEU VAL ALA ARG GLU 
THR LEU PRO GLU PRO ASN SER GLN GLY GLN 
ARG ASN ARG GLU LYS THR GLY GLU SER ASN 
CYS CYS VAL ILE LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
