segName='   A'
seq="""
GLY ALA MET SER TYR SER LEU TYR GLY THR 
THR LEU GLU GLN GLN TYR ASN LYS PRO LEU 
SER ASP LEU LEU ILE ARG CYS ILE ASN CYS 
GLN LYS PRO LEU SER PRO GLU GLU LYS GLN 
ARG HIS LEU ASP LYS LYS GLN ARG PHE HIS 
ASN ILE ARG GLY ARG TRP THR GLY ARG CYS 
MET SER CYS SER ARG SER SER ARG THR ARG 
ARG GLU THR GLN LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
