segName='   A'
seq="""
GLY SER SER GLY SER SER GLY SER ASP ASP 
ALA ARG ARG LEU THR VAL MET SER LEU GLN 
GLU SER GLY LEU LYS VAL ASN GLN PRO ALA 
SER PHE ALA ILE ARG LEU ASN GLY ALA LYS 
GLY LYS ILE ASP ALA LYS VAL HIS SER PRO 
SER GLY ALA VAL GLU GLU CYS HIS VAL SER 
GLU LEU GLU PRO ASP LYS TYR ALA VAL ARG 
PHE ILE PRO HIS GLU ASN GLY VAL HIS THR 
ILE ASP VAL LYS PHE ASN GLY SER HIS VAL 
VAL GLY SER PRO PHE LYS VAL ARG VAL GLY 
GLU PRO GLY GLN ALA GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
