segName='   A'
seq="""
GLY SER SER GLY SER SER GLY VAL SER ASP 
MET ASN GLY LEU GLY PHE LYS PRO PHE ASP 
LEU VAL ILE PRO PHE ALA VAL ARG LYS GLY 
GLU ILE THR GLY GLU VAL HIS MET PRO SER 
GLY LYS THR ALA THR PRO GLU ILE VAL ASP 
ASN LYS ASP GLY THR VAL THR VAL ARG TYR 
ALA PRO THR GLU VAL GLY LEU HIS GLU MET 
HIS ILE LYS TYR MET GLY SER HIS ILE PRO 
GLU SER PRO LEU GLN PHE TYR VAL ASN TYR 
PRO ASN SER GLY SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
