segName='   A'
seq="""
GLY SER SER GLY SER SER GLY PRO PRO PRO 
ALA PRO ILE PRO ASP LEU LYS VAL PHE GLU 
ARG GLU GLY VAL GLN LEU ASN LEU SER PHE 
ILE ARG PRO PRO GLU ASN PRO ALA LEU LEU 
LEU ILE THR ILE THR ALA THR ASN PHE SER 
GLU GLY ASP VAL THR HIS PHE ILE CYS GLN 
ALA ALA VAL PRO LYS SER LEU GLN LEU GLN 
LEU GLN ALA PRO SER GLY ASN THR VAL PRO 
ALA ARG GLY GLY LEU PRO ILE THR GLN LEU 
PHE ARG ILE LEU ASN PRO ASN LYS ALA PRO 
LEU ARG LEU LYS LEU ARG LEU THR TYR ASP 
HIS PHE HIS GLN SER VAL GLN GLU ILE PHE 
GLU VAL ASN ASN LEU PRO VAL GLU SER TRP 
GLN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
