segName='   A'
seq="""
GLY GLU VAL ARG ASN ILE VAL ASP LYS THR 
ALA SER PHE VAL ALA ARG ASN GLY PRO GLU 
PHE GLU ALA ARG ILE ARG GLN ASN GLU ILE 
ASN ASN PRO LYS PHE ASN PHE LEU ASN PRO 
ASN ASP PRO TYR HIS ALA TYR TYR ARG HIS 
LYS VAL SER GLU PHE LYS GLU GLY LYS ALA 
GLN GLU PRO SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
