segName='   A'
seq="""
GLY SER SER GLY SER SER GLY GLN ALA SER 
GLY HIS PHE SER VAL GLU LEU VAL ARG GLY 
TYR ALA GLY PHE GLY LEU THR LEU GLY GLY 
GLY ARG ASP VAL ALA GLY ASP THR PRO LEU 
ALA VAL ARG GLY LEU LEU LYS ASP GLY PRO 
ALA GLN ARG CYS GLY ARG LEU GLU VAL GLY 
ASP LEU VAL LEU HIS ILE ASN GLY GLU SER 
THR GLN GLY LEU THR HIS ALA GLN ALA VAL 
GLU ARG ILE ARG ALA GLY GLY PRO GLN LEU 
HIS LEU VAL ILE ARG ARG PRO LEU SER GLY 
PRO SER SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
