segName='   A'
seq="""
GLY SER SER GLY SER SER GLY VAL THR LEU 
SER LEU THR LYS ASP ASN PHE ASP ASP VAL 
VAL ASN ASN ALA ASP ILE ILE LEU VAL GLU 
PHE TYR ALA PRO TRP CYS GLY HIS CYS LYS 
LYS LEU ALA PRO GLU TYR GLU LYS ALA ALA 
LYS GLU LEU SER LYS ARG SER PRO PRO ILE 
PRO LEU ALA LYS VAL ASP ALA THR GLU GLN 
THR ASP LEU ALA LYS ARG PHE ASP VAL SER 
GLY TYR PRO THR LEU LYS ILE PHE ARG LYS 
GLY ARG PRO PHE ASP TYR ASN GLY PRO ARG 
GLU LYS TYR GLY ILE VAL ASP TYR MET ILE 
GLU GLN SER GLY SER GLY PRO SER SER GLY 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
