segName='   A'
seq="""
MET HIS HIS HIS HIS HIS HIS GLN TYR LYS 
LEU ALA LEU ASN GLY LYS THR LEU LYS GLY 
GLU THR THR THR GLU ALA VAL ASP ALA ALA 
THR ALA GLU LYS VAL PHE LYS GLN TYR ALA 
ASN ASP ASN GLY VAL ASP GLY GLU TRP THR 
TYR ASP ASP ALA THR LYS THR PHE THR VAL 
THR GLU GLY SER GLN TRP GLN PRO GLN LEU 
GLN GLN LEU ARG ASP MET GLY ILE GLN ASP 
ASP GLU LEU SER LEU ARG ALA LEU GLN ALA 
THR GLY GLY ASP ILE GLN ALA ALA LEU GLU 
LEU ILE PHE ALA GLY GLY ALA PRO
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
