segName='   A'
seq="""
GLY SER SER GLY SER SER GLY PRO VAL PRO 
ALA THR PRO ILE LEU GLN LEU GLU GLU CYS 
CYS THR HIS ASN ASN SER ALA THR LEU SER 
TRP LYS GLN PRO PRO LEU SER THR VAL PRO 
ALA ASP GLY TYR ILE LEU GLU LEU ASP ASP 
GLY ASN GLY GLY GLN PHE ARG GLU VAL TYR 
VAL GLY LYS GLU THR MET CYS THR VAL ASP 
GLY LEU HIS PHE ASN SER THR TYR ASN ALA 
ARG VAL LYS ALA PHE ASN LYS THR GLY VAL 
SER PRO TYR SER LYS THR LEU VAL LEU GLN 
THR SER GLU GLY SER GLY PRO SER SER GLY 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
