segName='   A'
seq="""
GLY SER SER GLY SER SER GLY LYS GLU ALA 
LEU GLU ALA LEU VAL PRO VAL THR ILE GLU 
VAL GLU VAL PRO PHE ASP LEU HIS ARG TYR 
VAL ILE GLY GLN LYS GLY SER GLY ILE ARG 
LYS MET MET ASP GLU PHE GLU VAL ASN ILE 
HIS VAL PRO ALA PRO GLU LEU GLN SER ASP 
ILE ILE ALA ILE THR GLY LEU ALA ALA ASN 
LEU ASP ARG ALA LYS ALA GLY LEU LEU GLU 
ARG VAL LYS GLU LEU GLN ALA GLU GLN GLU 
ASP ARG ALA LEU ARG SER PHE LYS SER GLY 
PRO SER SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
