segName='   A'
seq="""
GLY SER HIS MET ILE ALA PRO LEU SER VAL 
LYS ASP ASN ASP LYS TRP VAL ASP THR HIS 
VAL GLY LYS THR THR GLU ILE HIS LEU LYS 
GLY ASN PRO THR THR GLY TYR MET TRP THR 
ARG VAL GLY PHE VAL GLY LYS ASP VAL LEU 
SER ASP GLU ILE LEU GLU VAL VAL CYS LYS 
TYR THR PRO THR PRO SER SER THR PRO MET 
VAL GLY VAL GLY GLY ILE TYR VAL VAL LEU 
VAL LYS PRO ARG LYS ARG GLY HIS HIS THR 
LEU GLU LEU VAL TYR THR ARG PRO PHE GLU 
GLY ILE LYS PRO GLU ASN GLU ARG TYR THR 
LEU HIS LEU ASN VAL LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
