segName='   A'
seq="""
THR TYR SER LEU ARG THR PHE PHE VAL ARG 
GLU SER ALA GLU GLY LEU THR GLN GLY GLU 
LEU MET LYS LEU ILE LYS GLU ILE VAL GLU 
ASN GLU ASP LYS ARG LYS PRO TYR SER ASP 
GLN GLU ILE ALA ASN ILE LEU LYS GLU LYS 
GLY PHE LYS VAL ALA ARG ARG THR VAL ALA 
LYS TYR ARG GLU MET LEU GLY ILE PRO SER 
SER ARG GLU ARG ARG ILE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
