segName='   A'
seq="""
MET GLY SER SER HIS HIS HIS HIS HIS HIS 
SER SER GLY LEU VAL PRO ARG GLY SER HIS 
MET THR PHE CYS LEU GLU THR TYR LEU GLN 
GLN SER GLY GLU TYR GLU ILE HIS MET LYS 
ARG ALA GLY PHE ARG GLU CYS ALA ALA MET 
ILE GLU LYS LYS ALA ARG ARG VAL VAL HIS 
ILE LYS PRO GLY GLU LYS ILE LEU GLY ALA 
ARG ILE ILE GLY ILE PRO PRO VAL PRO ILE 
GLY ILE ASP GLU GLU ARG SER THR VAL MET 
ILE PRO TYR THR LYS PRO CYS TYR GLY THR 
ALA VAL VAL GLU LEU PRO VAL ASP PRO GLU 
GLU ILE GLU ARG ILE LEU GLU VAL ALA GLU 
PRO
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
