segName='   A'
seq="""
MET LYS HIS THR GLU LEU ARG ALA ALA VAL 
LEU ASP ALA LEU GLU LYS HIS ASP THR GLY 
ALA THR PHE PHE ASP GLY ARG PRO ALA VAL 
PHE ASP GLU ALA ASP PHE PRO ALA VAL ALA 
VAL TYR LEU THR GLY ALA GLU TYR THR GLY 
GLU GLU LEU ASP SER ASP THR TRP GLN ALA 
GLU LEU HIS ILE GLU VAL PHE LEU PRO ALA 
GLN VAL PRO ASP SER GLU LEU ASP ALA TRP 
MET GLU SER ARG ILE TYR PRO VAL MET SER 
ASP ILE PRO ALA LEU SER ASP LEU ILE THR 
SER MET VAL ALA SER GLY TYR ASP TYR ARG 
ARG ASP ASP ASP ALA GLY LEU TRP SER SER 
ALA ASP LEU THR TYR VAL ILE THR TYR GLU 
MET
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
