segName='   A'
seq="""
GLY SER SER HIS HIS HIS HIS HIS HIS SER 
SER GLY LEU VAL PRO ARG GLY SER HIS MET 
ALA SER ASN PRO ASN ASP LEU PRO ASP PHE 
PRO GLU HIS GLU TYR ALA ALA THR GLN GLN 
VAL GLY GLY GLY VAL ILE ASN GLY ASP LEU 
TYR LEU THR SER ALA SER GLY ALA ILE GLN 
LYS GLY THR ASN THR LYS VAL ALA LEU GLU 
PRO ALA THR SER TYR MET LYS ALA TYR TYR 
ALA LYS PHE GLY ASN LEU ASP ALA ALA LYS 
ARG ASP PRO ASP VAL GLN PRO PRO VAL LEU 
ASP PRO ARG ARG ALA THR TYR VAL ARG GLU 
ALA THR THR ASP GLN ASN GLY ARG PHE ASP 
PHE ASP HIS ILE PRO ASN GLY THR TYR TYR 
ILE SER SER GLU LEU THR TRP SER ALA GLN 
SER ASP GLY LYS THR ILE THR GLU GLY GLY 
THR VAL THR LYS LEU VAL THR VAL SER GLY 
SER GLN PRO GLN LYS VAL LEU LEU THR ARG 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
