segName='   A'
seq="""
GLY SER SER GLY SER SER GLY GLU PRO ALA 
ARG ILE GLU GLU GLU GLU LEU THR LEU THR 
ILE LEU ARG GLN THR GLY GLY LEU GLY ILE 
SER ILE ALA GLY GLY LYS GLY SER THR PRO 
TYR LYS GLY ASP ASP GLU GLY ILE PHE ILE 
SER ARG VAL SER GLU GLU GLY PRO ALA ALA 
ARG ALA GLY VAL ARG VAL GLY ASP LYS LEU 
LEU GLU VAL ASN GLY VAL ALA LEU GLN GLY 
ALA GLU HIS HIS GLU ALA VAL GLU ALA LEU 
ARG GLY ALA GLY THR ALA VAL GLN MET ARG 
VAL TRP ARG GLU SER GLY PRO SER SER GLY 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
