segName='   A'
seq="""
GLY SER SER GLY SER SER GLY GLU GLU GLN 
ILE VAL THR TRP LEU ILE SER LEU GLY VAL 
LEU GLU SER PRO LYS LYS THR ILE CYS ASP 
PRO GLU GLU PHE LEU LYS SER SER LEU LYS 
ASN GLY VAL VAL LEU CYS LYS LEU ILE ASN 
ARG LEU MET PRO GLY SER VAL GLU LYS PHE 
CYS LEU ASP PRO GLN THR GLU ALA ASP CYS 
ILE ASN ASN ILE ASN ASP PHE LEU LYS GLY 
CYS ALA THR LEU GLN VAL GLU ILE PHE ASP 
PRO ASP ASP LEU TYR SER GLY VAL ASN PHE 
SER LYS VAL LEU SER THR LEU LEU ALA VAL 
ASN LYS ALA THR GLU SER GLY PRO SER SER 
GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
