segName='   A'
seq="""
GLY SER SER GLY SER SER GLY ASP ALA GLY 
GLY GLY VAL GLY LYS GLU LEU VAL ASP LEU 
LYS ILE ILE TRP ASN LYS THR LYS HIS ASP 
VAL LYS VAL PRO LEU ASP SER THR GLY SER 
GLU LEU LYS GLN LYS ILE HIS SER ILE THR 
GLY LEU PRO PRO ALA MET GLN LYS VAL MET 
TYR LYS GLY LEU VAL PRO GLU ASP LYS THR 
LEU ARG GLU ILE LYS VAL THR SER GLY ALA 
LYS ILE MET VAL VAL GLY SER THR ILE SER 
GLY PRO SER SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
