segName='   A'
seq="""
GLY SER SER GLY SER SER GLY ALA GLY GLN 
VAL VAL HIS THR GLU THR THR GLU VAL VAL 
LEU THR ALA ASP PRO VAL THR GLY PHE GLY 
ILE GLN LEU GLN GLY SER VAL PHE ALA THR 
GLU THR LEU SER SER PRO PRO LEU ILE SER 
TYR ILE GLU ALA ASP SER PRO ALA GLU ARG 
CYS GLY VAL LEU GLN ILE GLY ASP ARG VAL 
MET ALA ILE ASN GLY ILE PRO THR GLU ASP 
SER THR PHE GLU GLU ALA ASN GLN LEU LEU 
ARG ASP SER SER ILE THR SER LYS VAL THR 
LEU GLU ILE GLU PHE ASP VAL ALA GLU SER 
VAL ILE PRO SER SER GLY SER GLY PRO SER 
SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
