segName='   A'
seq="""
GLY SER SER GLY SER SER GLY GLY GLU GLU 
TYR ILE ALA LEU TYR PRO TYR SER SER VAL 
GLU PRO GLY ASP LEU THR PHE THR GLU GLY 
GLU GLU ILE LEU VAL THR GLN LYS ASP GLY 
GLU TRP TRP THR GLY SER ILE GLY ASP ARG 
SER GLY ILE PHE PRO SER ASN TYR VAL LYS 
PRO LYS ASP SER GLY PRO SER SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
