segName='   A'
seq="""
TYR VAL GLU PHE GLN GLU ALA GLY SER CYS 
VAL GLN ASP GLY GLN ARG TYR ASN ASP LYS 
ASP VAL TRP LYS PRO GLU PRO CYS ARG ILE 
CYS VAL CYS ASP THR GLY THR VAL LEU CYS 
ASP ASP ILE ILE CYS GLU ASP VAL LYS ASP 
CYS LEU SER PRO GLU ILE PRO PHE GLY GLU 
CYS CYS PRO ILE CYS PRO ALA ASP LEU ALA 
ALA ALA ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
