segName='   A'
seq="""
GLY SER VAL VAL GLY GLY LEU GLY GLY TYR 
ALA MET GLY ARG VAL MET SER GLY MET ASN 
TYR HIS PHE ASP ARG PRO ASP GLU TYR ARG 
TRP TRP SER GLU ASN SER ALA ARG TYR PRO 
ASN ARG VAL TYR TYR ARG ASP TYR SER SER 
PRO VAL PRO GLN ASP VAL PHE VAL ALA ASP 
CYS PHE ASN ILE THR VAL THR GLU TYR SER 
ILE GLY PRO ALA ALA LYS LYS ASN THR SER 
GLU ALA VAL ALA ALA ALA ASN GLN THR GLU 
VAL GLU MET GLU ASN LYS VAL VAL THR LYS 
VAL ILE ARG GLU MET CYS VAL GLN GLN TYR 
ARG GLU TYR ARG LEU ALA SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
