segName='   A'
seq="""
MET GLY SER SER HIS HIS HIS HIS HIS HIS 
HIS HIS GLU ASN LEU TYR PHE GLN GLY SER 
LYS ARG LYS ILE ILE VAL ALA CYS GLY GLY 
ALA VAL ALA THR SER THR MET ALA ALA GLU 
GLU ILE LYS GLU LEU CYS GLN SER HIS ASN 
ILE PRO VAL GLU LEU ILE GLN CYS ARG VAL 
ASN GLU ILE GLU THR TYR MET ASP GLY VAL 
HIS LEU ILE CYS THR THR ALA ARG VAL ASP 
ARG SER PHE GLY ASP ILE PRO LEU VAL HIS 
GLY MET PRO PHE VAL SER GLY VAL GLY ILE 
GLU ALA LEU GLN ASN LYS ILE LEU THR ILE 
LEU GLN GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
