segName='   A'
seq="""
MET ALA ALA GLU LEU GLU TYR GLU SER VAL 
LEU CYS VAL LYS PRO ASP VAL SER VAL TYR 
ARG ILE PRO PRO ARG ALA SER ASN ARG GLY 
TYR ARG ALA SER ASP TRP LYS LEU ASP GLN 
PRO ASP TRP THR GLY ARG LEU ARG ILE THR 
SER LYS GLY LYS ILE ALA TYR ILE LYS LEU 
GLU ASP LYS VAL SER GLY GLU LEU PHE ALA 
GLN ALA PRO VAL GLU GLN TYR PRO GLY ILE 
ALA VAL GLU THR VAL THR ASP SER SER ARG 
TYR PHE VAL ILE ARG ILE GLN ASP GLY THR 
GLY ARG SER ALA PHE ILE GLY ILE GLY PHE 
THR ASP ARG GLY ASP ALA PHE ASP PHE ASN 
VAL SER LEU GLN ASP HIS PHE LYS TRP VAL 
LYS GLN GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
