segName='   A'
seq="""
ALA GLU GLU GLY GLN VAL ILE ALA CYS HIS 
THR VAL ASP THR TRP LYS GLU HIS PHE GLU 
LYS GLY LYS GLY SER GLN LYS LEU ILE VAL 
VAL ASP PHE THR ALA SER TRP CYS PRO PRO 
CYS LYS MET ILE ALA PRO ILE PHE ALA GLU 
LEU ALA LYS LYS PHE PRO ASN VAL THR PHE 
LEU LYS VAL ASP VAL ASP GLU LEU LYS ALA 
VAL ALA GLU GLU TRP ASN VAL GLU ALA MET 
PRO THR PHE ILE PHE LEU LYS ASP GLY LYS 
LEU VAL ASP LYS THR VAL GLY ALA ASP LYS 
ASP GLY LEU PRO THR LEU VAL ALA LYS HIS 
ALA THR ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
