segName='   A'
seq="""
GLY SER SER LEU SER PRO GLN ALA LEU ALA 
GLN PRO LEU LEU LEU GLN LEU PHE VAL ASP 
THR ARG PRO LEU SER GLN HIS ILE VAL GLN 
ARG VAL LYS ASN ILE LEU ALA ALA VAL GLU 
ALA THR VAL PRO ILE SER LEU GLN VAL ILE 
ASN VAL ALA ASP GLN PRO GLN LEU VAL GLU 
TYR TYR ARG LEU VAL VAL THR PRO ALA LEU 
VAL LYS ILE GLY PRO GLY SER ARG GLN VAL 
LEU SER GLY ILE ASP LEU THR ASP GLN LEU 
ALA ASN GLN LEU PRO GLN TRP LEU VAL GLN 
GLN GLU GLY ILE PHE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
