segName='   A'
seq="""
GLY SER MET THR GLU VAL TYR ASP LEU GLU 
ILE THR THR ASN ALA THR ASP PHE PRO MET 
GLU LYS LYS TYR PRO ALA GLY MET SER LEU 
ASN ASP LEU LYS LYS LYS LEU GLU LEU VAL 
VAL GLY THR THR VAL ASP SER MET ARG ILE 
GLN LEU PHE ASP GLY ASP ASP GLN LEU LYS 
GLY GLU LEU THR ASP GLY ALA LYS SER LEU 
LYS ASP LEU GLY VAL ARG ASP GLY TYR ARG 
ILE HIS ALA VAL ASP VAL THR GLY GLY ASN 
GLU ASP PHE LYS ASP GLU SER MET VAL GLU 
LYS TYR GLU MET SER ASP ASP THR TYR GLY 
LYS ARG THR ASP SER VAL ARG ALA TRP LYS 
LYS LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
