segName='   A'
seq="""
MET GLY HIS HIS HIS HIS HIS HIS HIS HIS 
HIS HIS SER SER GLY HIS GLY GLY ARG HIS 
ASN ARG GLN ALA SER GLU PHE ILE PRO ALA 
GLN GLY VAL ASP GLU LYS THR LEU ALA ASP 
ALA ALA GLN LEU ALA SER LEU ALA ASP GLU 
THR PRO GLU GLY ARG SER ILE VAL ILE LEU 
ALA LYS GLN ARG PHE ASN LEU ARG GLU ARG 
ASP VAL GLN SER LEU HIS ALA THR PHE VAL 
PRO PHE THR ALA GLN SER ARG MET SER GLY 
ILE ASN ILE ASP ASN ARG MET ILE ARG LYS 
GLY SER VAL ASP ALA ILE ARG ARG HIS VAL 
GLU ALA ASN GLY GLY HIS PHE PRO THR ASP 
VAL ASP GLN LYS VAL ASP GLN VAL ALA ARG 
GLN GLY ALA THR PRO LEU VAL VAL VAL GLU 
GLY SER ARG VAL LEU GLY VAL ILE ALA LEU 
LYS ASP ILE VAL LYS GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
