segName='   A'
seq="""
LEU SER LEU THR GLN LEU SER SER GLY ASN 
PRO VAL TYR GLU LYS TYR TYR ARG GLN VAL 
GLU ALA GLY ASN THR GLY ARG VAL LEU ALA 
LEU ASP ALA ALA ALA PHE LEU LYS LYS SER 
GLY LEU PRO ASP LEU ILE LEU GLY LYS ILE 
TRP ASP LEU ALA ASP THR ASP GLY LYS GLY 
VAL LEU SER LYS GLN GLU PHE PHE VAL ALA 
LEU ARG LEU VAL ALA CYS ALA GLN ASN GLY 
LEU GLU VAL SER LEU SER SER LEU SER LEU 
ALA VAL PRO PRO PRO ARG PHE HIS ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
