segName='   A'
seq="""
SER ASP LEU TRP VAL GLN LYS MET LYS THR 
TYR PHE ASN ARG ILE ASP PHE ASP LYS ASP 
GLY ALA ILE THR ARG MET ASP PHE GLU SER 
MET ALA GLU ARG PHE ALA LYS GLU SER GLU 
MET LYS ALA GLU HIS ALA LYS VAL LEU MET 
ASP SER LEU THR GLY VAL TRP ASP ASN PHE 
LEU THR ALA VAL ALA GLY GLY LYS GLY ILE 
ASP GLU THR THR PHE ILE ASN SER MET LYS 
GLU MET VAL LYS ASN PRO GLU ALA LYS SER 
VAL VAL GLU GLY PRO LEU PRO LEU PHE PHE 
ARG ALA VAL ASP THR ASN GLU ASP ASN ASN 
ILE SER ARG ASP GLU TYR GLY ILE PHE PHE 
GLY MET LEU GLY LEU ASP LYS THR MET ALA 
PRO ALA SER PHE ASP ALA ILE ASP THR ASN 
ASN ASP GLY LEU LEU SER LEU GLU GLU PHE 
VAL ILE ALA GLY SER ASP PHE PHE MET ASN 
ASP GLY ASP SER THR ASN LYS VAL PHE TRP 
GLY PRO LEU VAL
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
