segName='   A'
seq="""
MET LYS LYS LEU GLN ILE ALA VAL GLY ILE 
ILE ARG ASN GLU ASN ASN GLU ILE PHE ILE 
THR ARG ARG ALA ALA ASP ALA HIS MET ALA 
ASN LYS LEU GLU PHE PRO GLY GLY LYS ILE 
GLU MET GLY GLU THR PRO GLU GLN ALA VAL 
VAL ARG GLU LEU GLN GLU GLU VAL GLY ILE 
THR PRO GLN HIS PHE SER LEU PHE GLU LYS 
LEU GLU TYR GLU PHE PRO ASP ARG HIS ILE 
THR LEU TRP PHE TRP LEU VAL GLU ARG TRP 
GLU GLY GLU PRO TRP GLY LYS GLU GLY GLN 
PRO GLY GLU TRP MET SER LEU VAL GLY LEU 
ASN ALA ASP ASP PHE PRO PRO ALA ASN GLU 
PRO VAL ILE ALA LYS LEU LYS ARG LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
