segName='   A'
seq="""
GLY SER HIS GLN SER GLU VAL ASN LYS ASP 
LEU GLN GLN TYR TRP SER SER LEU ASN VAL 
VAL PRO GLY ALA ARG VAL LEU VAL PRO LEU 
CYS GLY LYS SER GLN ASP MET SER TRP LEU 
SER GLY GLN GLY TYR HIS VAL VAL GLY ALA 
GLU LEU SER GLU ALA ALA VAL GLU ARG TYR 
PHE THR GLU ARG GLY GLU GLN PRO HIS ILE 
THR SER GLN GLY ASP PHE LYS VAL TYR ALA 
ALA PRO GLY ILE GLU ILE TRP CYS GLY ASP 
PHE PHE ALA LEU THR ALA ARG ASP ILE GLY 
HIS CYS ALA ALA PHE TYR ASP ARG ALA ALA 
MET ILE ALA LEU PRO ALA ASP MET ARG GLU 
ARG TYR VAL GLN HIS LEU GLU ALA LEU MET 
PRO GLN ALA CYS SER GLY LEU LEU ILE THR 
LEU GLU TYR ASP GLN ALA LEU LEU GLU GLY 
PRO PRO PHE SER VAL PRO GLN THR TRP LEU 
HIS ARG VAL MET SER GLY ASN TRP GLU VAL 
THR LYS VAL GLY GLY GLN ASP THR LEU HIS 
SER SER ALA ARG GLY LEU LYS ALA GLY LEU 
GLU ARG MET ASP GLU HIS VAL TYR VAL LEU 
GLU ARG VAL
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
