segName='   A'
seq="""
ALA THR TYR ASN VAL LYS LEU ILE THR PRO 
ASP GLY GLU VAL GLU PHE LYS CYS ASP ASP 
ASP VAL TYR VAL LEU ASP GLN ALA GLU GLU 
GLU GLY ILE ASP ILE PRO TYR SER CYS ARG 
ALA GLY SER CYS SER SER CYS ALA GLY LYS 
VAL VAL SER GLY SER ILE ASP GLN SER ASP 
GLN SER PHE LEU ASP ASP GLU GLN MET ASP 
ALA GLY TYR VAL LEU THR CYS HIS ALA TYR 
PRO THR SER ASP VAL VAL ILE GLU THR HIS 
LYS GLU GLU GLU ILE VAL
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
