segName='   A'
seq="""
ALA ALA PRO THR ALA THR VAL THR PRO SER 
SER GLY LEU SER ASP GLY THR VAL VAL LYS 
VAL ALA GLY ALA GLY LEU GLN ALA GLY THR 
ALA TYR ASP VAL GLY GLN CYS ALA TRP VAL 
ASP THR GLY VAL LEU ALA CYS ASN PRO ALA 
ASP PHE SER SER VAL THR ALA ASP ALA ASN 
GLY SER ALA SER THR SER LEU THR VAL ARG 
ARG SER PHE GLU GLY PHE LEU PHE ASP GLY 
THR ARG TRP GLY THR VAL ASP CYS THR THR 
ALA ALA CYS GLN VAL GLY LEU SER ASP ALA 
ALA GLY ASN GLY PRO GLU GLY VAL ALA ILE 
SER PHE ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
