segName='   A'
seq="""
GLY SER HIS MET ASP ASP TYR GLU LYS LEU 
LEU GLU ARG ALA ILE ASP GLN LEU PRO PRO 
GLU VAL PHE GLU THR LYS ARG PHE GLU VAL 
PRO LYS ALA TYR SER VAL ILE GLN GLY ASN 
ARG THR PHE ILE GLN ASN PHE ARG GLU VAL 
ALA ASP ALA LEU ASN ARG ASP PRO GLN HIS 
LEU LEU LYS PHE LEU LEU ARG GLU LEU GLY 
THR ALA GLY ASN LEU GLU GLY GLY ARG ALA 
ILE LEU GLN GLY LYS PHE THR HIS PHE LEU 
ILE ASN GLU ARG ILE GLU ASP TYR VAL ASN 
LYS PHE VAL ILE CYS HIS GLU CYS ASN ARG 
PRO ASP THR ARG ILE ILE ARG GLU GLY ARG 
ILE SER LEU LEU LYS CYS GLU ALA CYS GLY 
ALA LYS ALA PRO LEU LYS ASN VAL
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
