segName='   A'
seq="""
MET ASP GLY VAL MET SER ALA VAL THR VAL 
ASN ASP ASP GLY LEU VAL LEU ARG LEU TYR 
ILE GLN PRO LYS ALA SER ARG ASP SER ILE 
VAL GLY LEU HIS GLY ASP GLU VAL LYS VAL 
ALA ILE THR ALA PRO PRO VAL ASP GLY GLN 
ALA ASN SER HIS LEU VAL LYS PHE LEU GLY 
LYS GLN PHE ARG VAL ALA LYS SER GLN VAL 
VAL ILE GLU LYS GLY GLU LEU GLY ARG HIS 
LYS GLN ILE LYS ILE ILE ASN PRO GLN GLN 
ILE PRO PRO GLU VAL ALA ALA LEU ILE ASN 
LEU GLU HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
