segName='   A'
seq="""
ALA CYS GLN ALA SER GLN LEU ALA VAL CYS 
ALA SER ALA ILE LEU SER GLY ALA LYS PRO 
SER GLY GLU CYS CYS GLY ASN LEU ARG ALA 
GLN GLN GLY CYS PHE CYS GLN TYR ALA LYS 
ASP PRO THR TYR GLY GLN TYR ILE ARG SER 
PRO HIS ALA ARG ASP THR LEU THR SER CYS 
GLY LEU ALA VAL PRO HIS CYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
