segName='   A'
seq="""
GLY SER HIS MET GLY HIS GLU LEU ALA LYS 
GLN GLU ILE ARG VAL ARG VAL GLU LYS ASP 
PRO GLU LEU GLY PHE SER ILE SER GLY GLY 
VAL GLY GLY ARG GLY ASN PRO PHE ARG PRO 
ASP ASP ASP GLY ILE PHE VAL THR ARG VAL 
GLN PRO GLU GLY PRO ALA SER LYS LEU LEU 
GLN PRO GLY ASP LYS ILE ILE GLN ALA ASN 
GLY TYR SER PHE ILE ASN ILE GLU HIS GLY 
GLN ALA VAL SER LEU LEU LYS THR PHE GLN 
ASN THR VAL GLU LEU ILE ILE VAL ARG GLU 
VAL SER SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
