segName='   A'
seq="""
GLY PRO LEU GLY SER SER TRP LEU PHE LEU 
GLU VAL ILE ALA GLY PRO ALA ILE GLY LEU 
GLN HIS ALA VAL ASN SER THR SER SER SER 
LYS LEU PRO VAL LYS LEU GLY ARG VAL SER 
PRO SER ASP LEU ALA LEU LYS ASP SER GLU 
VAL SER GLY LYS HIS ALA GLN ILE THR TRP 
ASN SER THR LYS PHE LYS TRP GLU LEU VAL 
ASP MET GLY SER LEU ASN GLY THR LEU VAL 
ASN SER HIS SER ILE SER HIS PRO ASP LEU 
GLY SER ARG LYS TRP GLY ASN PRO VAL GLU 
LEU ALA SER ASP ASP ILE ILE THR LEU GLY 
THR THR THR LYS VAL TYR VAL ARG ILE SER 
SER GLN ASN GLU PHE GLN ILE PRO PHE LYS 
ILE GLY VAL ALA SER ASP PRO MET ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
